Mechanistic integration of exposure and effects: advances to apply systems toxicology in support of regulatory decision-making

AM Jarabek, DE Hines - Current Opinion in Toxicology, 2019 - Elsevier
… demonstrated how an AOP could be used to organize mechanistic toxicity data across … In
this case study, an AOP was used to assemble data from mechanistic toxicity assays, whereas …

Predictive systems toxicology

NA Kiani, MM Shang, H Zenil, J Tegner - Computational Toxicology …, 2018 - Springer
… of toxicity but also enable mechanisticimportance and challenge of pruning a large,
but for the given application reasonable number of features to include in the network model

[HTML][HTML] From causal networks to adverse outcome pathways: A developmental neurotoxicity case study

Ž Ramšak, V Modic, RA Li, C Vom Berg… - … in Toxicology, 2022 - frontiersin.org
… , based on manually curated causal toxicological networks. As a case study, we took a
recently published zebrafish developmental neurotoxicity network, which contains causally …

Developing Network-Based Systems Toxicology by Combining Transcriptomics Data with Literature Mining and Multiscale Quantitative Modeling

A Sewer, M Talikka, F Martin, J Hoeng… - Bioinformatics in the …, 2018 - books.google.com
… Another advantageous aspect of applying network-based systems toxicology is the fact that
it offers an explicit framework for “mechanistic translatability” between test systems. As the …

A network toxicology approach for mechanistic modelling of nanomaterial hazard and adverse outcomes

G del Giudice, A Serra, A Pavel, M Torres Maia… - bioRxiv, 2024 - biorxiv.org
… framework, we selected three case studies on ENMs exposures which … function deterioration
in COVID-19 [54]. In order to produce a quantitative evaluation of the use of network models

… outcome pathways on silver nanoparticle-induced reproductive toxicity via oxidative stress in the nematode Caenorhabditis elegans using a Bayesian network model

J Jeong, T Song, N Chatterjee, I Choi, YK Cha… - …, 2018 - Taylor & Francis
… oxidative stress as the major mechanism underlying toxicity and reproduction failure as the
… conducted a case study of building an AOP to link oxidative stress with reproductive toxicity. …

[HTML][HTML] The evolving role of investigative toxicology in the pharmaceutical industry

F Pognan, M Beilmann, H Boonen, A Czich… - Nature reviews drug …, 2023 - nature.com
… status of the field using case studies and discuss the potential … Integrating classic toxicology
approaches with network models … , systems toxicology frameworks, based upon mechanistic

[HTML][HTML] Systems toxicology meta-analysis—From aerosol exposure to nanotoxicology

M Talikka, V Belcastro, S Gubian, F Martin… - … Opinion in Toxicology, 2019 - Elsevier
studies on engineered nanomaterials to gain mechanistic insight … pave the way to
more accurate toxicity predictions. In the next … network models in systems toxicology meta-analysis. …

Community-reviewed biological network models for toxicology and drug discovery applications

AA Namasivayam, AF Morales… - … and systems …, 2016 - journals.sagepub.com
… the first Network Verification Challenge (NVC). In this study, we show that the networks
were further improved during a second NVC (NVC2), in which the crowd added mechanistic

Systems toxicology approach to unravel early indicators of squamous cell carcinoma rate in rat nasal epithelium induced by formaldehyde exposure

F Martin, M Talikka, J Hoeng, MC Peitsch - Practical Applications of …, 2020 - Springer
… response to FA exposure across the time points [8], and in this work, we sought to gain
mechanistic insight into the dose effect regarding carcinoma rate. Moreover, the network models